Sequence Similarity Clusters for the Entities in PDB 3MMY

Entity #1 | Chains: A,C,E,G
mRNA export factor protein, length: 368 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18816
95 % 1 2 17787 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 16699
70 % 1 2 16265
50 % 1 2 14655
40 % 1 2 13107
30 % 1 2 12412
Entity #2 | Chains: B,D,F,H
Nuclear pore complex protein Nup98 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19703
95 % 1 2 18297 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 2 17936
70 % 1 2 16693
50 % 1 2 15043
40 % 1 2 13994
30 % 1 2 12733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures