Sequence Similarity Clusters for the Entities in PDB 3MM0

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,K,M,N
Avidin, Avidin-related protein 4/5 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4212
95 % 2 3 4610 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 12 1917
70 % 38 41 505
50 % 40 43 515
40 % 42 45 531
30 % 189 195 119

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Y55 1 X, Y Avidin-related protein 4/5 9031
2 2OF8 1 A, B Avidin-related protein 4/5 9031
3 2FHL 1 A, B Avidin-related protein 4/5 9031
4 2OFB 1 A, B Avidin-related protein 4/5 9031
5 1Y53 1 X, Y Avidin-related protein 4/5 9031
6 2FHN 1 X, Y Avidin-related protein 4/5 9031
7 2OF9 1 A, B Avidin-related protein 4/5 9031
8 2OFA 1 A, B Avidin-related protein 4/5 9031
9 1Y52 1 X, Y Avidin-related protein 4/5 9031
10 4BCS 1 A, B CHIMERIC AVIDIN 9031
11 3MM0 1 A, B, C, D, E, F, G, H, I, K, M, N Avidin, Avidin-related protein 4/5 SEE REMARK 999 FOR CHIMERA ASSEMBLY INFORMATION P02701 Residues 25-61, 85-152 and P56734 residues 62-82 9031
12 2MF6 1 A, B, C, D Avidin, Avidin-related protein 4/5 chimera of Avidin and Avidin-related protein 4/5 P02701 Residues 25-61, 85-152 and P56734 residues 62-82 9031