Sequence Similarity Clusters for the Entities in PDB 3MM0

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,K,M,N
Avidin, Avidin-related protein 4/5 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4501
95 % 2 3 4500 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 12 1980
70 % 38 41 502
50 % 40 43 516
40 % 42 45 533
30 % 189 195 117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Y55 1 X, Y Avidin-related protein 4/5 9031
2 2OF8 1 A, B Avidin-related protein 4/5 9031
3 2FHL 1 A, B Avidin-related protein 4/5 9031
4 2OFB 1 A, B Avidin-related protein 4/5 9031
5 1Y53 1 X, Y Avidin-related protein 4/5 9031
6 2FHN 1 X, Y Avidin-related protein 4/5 9031
7 2OF9 1 A, B Avidin-related protein 4/5 9031
8 1WBI 1 A, B, C, D, E, F, G, H AVIDIN-RELATED PROTEIN 2 9031
9 1VYO 1 A, B AVIDIN 9031
10 2OFA 1 A, B Avidin-related protein 4/5 9031
11 3VGW 1 A, B, C, D, E, F, G, H Avidin UNP residues 25-147 9031
12 2UYW 1 A, D XENAVIDIN 8364
13 2UZ2 1 A, D XENAVIDIN 8364
14 1Y52 1 X, Y Avidin-related protein 4/5 9031
15 3VHI 1 A, B, C, D Avidin UNP residues 26-147 9031
16 2C1S 1 A, B BIOTIN BINDING PROTEIN A 9031
17 4BCS 1 A, B CHIMERIC AVIDIN 9031
18 1NQN 1 A, B Avidin 9031
19 5MYQ 1 A, B, C, D Avidin 9031
20 4JHQ 1 A, B Avidin 9031
21 4U46 1 A, B Avidin OmpA signal was used in expression. UNP residues 25-152 9031
22 3VHM 1 A, B, C, D Avidin UNP residues 25-147 9031
23 1IJ8 1 A, B AVIDIN 9031
24 5CHK 1 A Avidin UNP residues 25-152 9031
25 1RAV 1 A, B AVIDIN 9031
26 2C1Q 1 A BIOTIN BINDING PROTEIN A 9031
27 5IRW 1 A, B, C, D Avidin 9031
28 5IRU 1 A, B, C, D Avidin 9031
29 2CAM 1 A, B AVIDIN 9031
30 1LDO 1 A, B avidin 9031
31 2A8G 1 A, B Avidin 9031
32 3VHH 1 A, B, C, D Avidin UNP residues 25-147 9031
33 4I60 1 A Avidin 9031
34 1AVD 1 A, B AVIDIN 9031
35 5HLM 1 A, B, C, D Avidin 9031
36 1AVE 1 A, B AVIDIN 9031
37 5LUR 1 A, B Avidin 9031
38 2AVI 1 A, B AVIDIN 9031
39 2A5B 1 A, B Avidin 9031
40 2A5C 1 A, B Avidin 9031
41 1LDQ 1 A, B Avidin 9031
42 3MM0 1 A, B, C, D, E, F, G, H, I, K, M, N Avidin, Avidin-related protein 4/5 SEE REMARK 999 FOR CHIMERA ASSEMBLY INFORMATION P02701 Residues 25-61, 85-152 and P56734 residues 62-82 9031
43 1LEL 1 A, B Avidin 9031
44 3FDC 1 A, B Avidin 9031
45 2MF6 1 A, B, C, D Avidin, Avidin-related protein 4/5 chimera of Avidin and Avidin-related protein 4/5 P02701 Residues 25-61, 85-152 and P56734 residues 62-82 9031