Sequence Similarity Clusters for the Entities in PDB 3MM0

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,K,M,N
Avidin, Avidin-related protein 4/5 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4217
95 % 2 3 4613 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 11 12 1956
70 % 38 41 505
50 % 40 43 519
40 % 42 45 532
30 % 190 196 117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2F01 1 A, B Streptavidin 1895
2 3RY2 1 A, B Streptavidin 1895
3 1LUQ 1 A, B Streptavidin 1895
4 3WYQ 1 A, B Streptavidin UNP residues 37-163 1895
5 2GH7 1 A, B Streptavidin 1895
6 3RY1 1 A, B, C, D Streptavidin 1895
7 1Y55 1 X, Y Avidin-related protein 4/5 9031
8 4CPE 1 A, B STREPTAVIDIN WILD-TYPE CORE STREPTAVIDIN RESIDUES 37-163 1895
9 2OF8 1 A, B Avidin-related protein 4/5 9031
10 2FHL 1 A, B Avidin-related protein 4/5 9031
11 6GH7 1 A, B, C, D Streptavidin 1895
12 1SWU 1 A, B, C, D STREPTAVIDIN 1895
13 4CPF 1 A, B STREPTAVIDIN WILD-TYPE CORE STREPTAVIDIN RESIDUES 37-163 1895
14 2G5L 1 A, B Streptavidin residues 13-139 1895
15 3WZP 1 A, B, C, D Streptavidin UNP residues 37-163 1895
16 1RXJ 1 A, B, C, D Streptavidin streptavidin mutant (M2) where the L3,4 loop seq (GNAES) was substituted for the loop from avidin (TATSNEIK) 1895
17 4Y5D 1 A, B, C, D Streptavidin UNP residues 39-160 1895
18 4Y59 1 A, B, C, D Streptavidin UNP residues 39-159 1895
19 3T6F 1 A, B Streptavidin UNP residues 37-163 1895
20 2OFB 1 A, B Avidin-related protein 4/5 9031
21 5B5F 1 A, B, C, D Streptavidin UNP residues 40-159 1895
22 1Y53 1 X, Y Avidin-related protein 4/5 9031
23 3WYP 1 A, B, C, D Streptavidin UNP residues 37-163 1895
24 3MG5 1 A, B, C, D Streptavidin CORE STREPTAVIDIN (RESIDUES 13-139) 1895
25 3T6L 1 A Streptavidin UNP residues 37-163 1895
26 2IZB 1 A STREPTAVIDIN 1895
27 2FHN 1 X, Y Avidin-related protein 4/5 9031
28 4YVB 1 A, B, C, D Streptavidin 1895
29 3WZN 1 A, B Streptavidin UNP residues 37-163 1895
30 2IZK 1 A STREPTAVIDIN 1895
31 4IRW 1 A Streptavidin UNP residues 36-163 1895
32 1MK5 1 A, B Streptavidin Core Streptavidin (residues 13-139) 1895
33 2RTM 1 A STREPTAVIDIN 1895
34 2OF9 1 A, B Avidin-related protein 4/5 9031
35 2IZJ 1 A STREPTAVIDIN 1895
36 2Y3E 1 A, B STREPTAVIDIN STREPTAVIDIN MUTATED TO INCREASE BIOTIN BINDING AFFINITY RESIDUES 37-163 1895
37 2IZH 1 B, D STREPTAVIDIN 1895
38 6AVK 1 A, B Streptavidin 1895
39 1WBI 1 A, B, C, D, E, F, G, H AVIDIN-RELATED PROTEIN 2 9031
40 4BX5 2 B, D STREPTAVIDIN RESIDUES 37-163 1895
41 2Y3F 1 A STREPTAVIDIN STREPTAVIDIN MUTATED TO INCREASE BIOTIN BINDING AFFINITY RESIDUES 37-163 1895
42 2IZG 1 B, D STREPTAVIDIN 1895
43 5B5G 1 A, B, C, D Streptavidin UNP residues 40-159 1895
44 2RTA 1 A STREPTAVIDIN 1895
45 2RTQ 1 B, D STREPTAVIDIN 1895
46 1MOY 1 A Streptavidin core streptavidin, residues 13-139 1895
47 2RTG 1 B, D STREPTAVIDIN 1895
48 1VYO 1 A, B AVIDIN 9031
49 2RTJ 1 A STREPTAVIDIN 1895
50 2IZC 1 B, D STREPTAVIDIN 1895
51 2RTI 1 B, D STREPTAVIDIN 1895
52 2RTL 1 A STREPTAVIDIN 1895
53 1DF8 1 A, B PROTEIN (STREPTAVIDIN) CORE, RESIDUES 13-139 1895
54 1N9Y 1 A, B, C, D Streptavidin core streptavidin, residues 13-139 1895
55 6QBB 1 A, B Streptavidin 1895
56 2OFA 1 A, B Avidin-related protein 4/5 9031
57 4CPI 1 A, B, C, D STREPTAVIDIN RESIDUES 37-163 1895
58 6M9B 1 A, B, C, D Streptavidin 1895
59 2IZL 1 B, D STREPTAVIDIN 1895
60 3WZO 1 A, B, C, D Streptavidin UNP residues 37-163 1895
61 1VWL 1 B, D STREPTAVIDIN 1895
62 1VWK 1 B, D STREPTAVIDIN 1895
63 1VWG 1 B STREPTAVIDIN 1895
64 1VWJ 1 B, D STREPTAVIDIN 1895
65 1VWH 1 B STREPTAVIDIN 1895
66 2IZA 1 A STREPTAVIDIN 1895
67 2RTF 1 B, D STREPTAVIDIN 1895
68 2IZF 1 B, D STREPTAVIDIN 1895
69 1N9M 1 A, B, C, D Streptavidin core streptavidin, residues 13-139 1895
70 1VWI 1 B, D STREPTAVIDIN 1895
71 2RTE 1 B, D STREPTAVIDIN 1895
72 1VWE 1 B STREPTAVIDIN 1895
73 2IZI 1 A STREPTAVIDIN 1895
74 4BX6 1 A, D STREPTAVIDIN DEAD VARIANT RESIDUES 37-163 1895
75 4BX6 2 B, C STREPTAVIDIN RESIDUES 37-163 1895
76 2RTP 1 B, D STREPTAVIDIN 1895
77 1VWR 1 B STREPTAVIDIN 1895
78 1MM9 1 A Streptavidin Core Streptavidin (residues 13-139) 1895
79 2RTB 1 B, D STREPTAVIDIN 1895
80 2RTC 1 B, D STREPTAVIDIN 1895
81 2RTH 1 B, D STREPTAVIDIN 1895
82 3VGW 1 A, B, C, D, E, F, G, H Avidin UNP residues 25-147 9031
83 1SRI 1 A, B STREPTAVIDIN 1895
84 2IZE 1 B, D STREPTAVIDIN 1895
85 2RTR 1 B, D STREPTAVIDIN 1895
86 1VWM 1 B STREPTAVIDIN 1895
87 2RTO 1 B, D STREPTAVIDIN 1895
88 1SWH 1 A, B, C, D CORE-STREPTAVIDIN 1895
89 2UYW 1 A, D XENAVIDIN 8364
90 2IZD 1 B, D STREPTAVIDIN 1895
91 1KL3 1 A, B, C, D streptavidin 1895
92 1RSU 1 B STREPTAVIDIN RESIDUES 13 - 139 1895
93 4CPH 1 A, D STREPTAVIDIN RESIDUES 37-163 1895
94 4CPH 2 B, C STREPTAVIDIN RESIDUES 37-163 1895
95 1VWO 1 B STREPTAVIDIN 1895
96 2UZ2 1 A, D XENAVIDIN 8364
97 1MEP 1 A, B, C, D Streptavidin Core streptavidin (residues 13-139) 1895
98 5TO2 1 A, B, C Streptavidin 1895
99 5TO2 2 D Streptavidin 1895
100 1RST 1 B STREPTAVIDIN RESIDUES 13 - 139 1895
101 1SWC 1 A, B, C, D STREPTAVIDIN PH 4.5 CORE, RESIDUES 13 - 139 1895
102 2RTD 1 B, D STREPTAVIDIN 1895
103 1KL4 1 A, B, C, D streptavidin 1895
104 1Y52 1 X, Y Avidin-related protein 4/5 9031
105 1VWQ 1 B STREPTAVIDIN 1895
106 1VWP 1 B STREPTAVIDIN 1895
107 1SLF 1 B, D STREPTAVIDIN 1895
108 1SRG 1 A, B STREPTAVIDIN 1895
109 1RXK 1 A, B Streptavidin Streptavidin mutant M3 1895
110 3VHI 1 A, B, C, D Avidin UNP residues 26-147 9031
111 1SLG 1 B, D STREPTAVIDIN 1895
112 1SRE 1 A, B STREPTAVIDIN 1895
113 1SWA 1 A, B, C, D STREPTAVIDIN PH 4.5 CORE, RESIDUES 13 - 139 1895
114 1SRJ 1 A, B STREPTAVIDIN 1895
115 1NBX 1 A, B, C, D Streptavidin core streptavidin, residues 13-139 1895
116 2C1S 1 A, B BIOTIN BINDING PROTEIN A 9031
117 1KL5 1 A, B, C, D streptavidin 1895
118 1NQM 1 A, B, C, D Streptavidin 1895
119 1SWB 1 A, B, C, D STREPTAVIDIN PH 7.5 CORE, RESIDUES 13 - 139 1895
120 1STR 1 B, D STREPTAVIDIN 1895
121 1VWB 1 B STREPTAVIDIN 1895
122 4BCS 1 A, B CHIMERIC AVIDIN 9031
123 1HQQ 1 A, B, C, D STREPTAVIDIN 1895
124 5JD2 1 A, B, C, D Streptavidin 1895
125 1SWQ 1 A, B, C, D CORE-STREPTAVIDIN 1895
126 1VWD 1 B STREPTAVIDIN 1895
127 1NC9 1 A, B, C, D Streptavidin core strepavidin, residues 13-139 1895
128 2RTK 1 A STREPTAVIDIN 1895
129 1KFF 1 A, B, C, D streptavidin 1895
130 1NQN 1 A, B Avidin 9031
131 1VWA 1 B, D STREPTAVIDIN 1895
132 1VWC 1 B STREPTAVIDIN 1895
133 1HXZ 1 A, B STREPTAVIDIN 1895
134 1SWR 1 A, B, C, D CORE-STREPTAVIDIN 1895
135 5MYQ 1 A, B, C, D Avidin 9031
136 1HXL 1 A, B STREPTAVIDIN 1895
137 4JHQ 1 A, B Avidin 9031
138 1SWO 1 A, B, C, D CORE-STREPTAVIDIN 1895
139 1N43 1 A, B, C, D Streptavidin core streptavidin, residues 13-139 1895
140 1VWN 1 B STREPTAVIDIN 1895
141 1SWJ 1 A, B, C, D CORE-STREPTAVIDIN 1895
142 1VWF 1 B STREPTAVIDIN 1895
143 4U46 1 A, B Avidin OmpA signal was used in expression. UNP residues 25-152 9031
144 4JNJ 1 A, B, C, D Streptavidin/Rhizavidin Hybrid unp residues 12-134 1895
145 1NDJ 1 A, B, C, D Streptavidin core streptavidin, residues 13-139 1895
146 1SWE 1 A, B, C, D STREPTAVIDIN PH 4.5, COMPLEXED WITH BIOTIN CORE, RESIDUES 13 - 139 1895
147 1SWD 1 A, B, C, D STREPTAVIDIN PH 4.5, COMPLEXED WITH BIOTIN CORE, RESIDUES 13 - 139 1895
148 1N7Y 1 A, B, C, D Streptavidin core streptavidin, residues 13-139 1895
149 1STS 1 B, D STREPTAVIDIN 1895
150 1PTS 1 A, B STREPTAVIDIN 1895
151 1SRF 1 A, B STREPTAVIDIN 1895
152 1SWL 1 A, B, C, D CORE-STREPTAVIDIN 1895
153 1SWK 1 A, B, C, D CORE-STREPTAVIDIN 1895
154 1SWS 1 A, B, C, D PROTEIN (STREPTAVIDIN) 1895
155 1LCZ 1 A, B Streptavidin 1895
156 3VHM 1 A, B, C, D Avidin UNP residues 25-147 9031
157 1SLE 1 B, D STREPTAVIDIN 1895
158 1IJ8 1 A, B AVIDIN 9031
159 1SWT 1 A, B PROTEIN (STREPTAVIDIN) PH 4.5 1895
160 5CHK 1 A Avidin UNP residues 25-152 9031
161 1HY2 1 A, B, C, D STREPTAVIDIN 1895
162 1RAV 1 A, B AVIDIN 9031
163 2C1Q 1 A BIOTIN BINDING PROTEIN A 9031
164 2RTN 1 B, D STREPTAVIDIN 1895
165 5IRW 1 A, B, C, D Avidin 9031
166 1SWN 1 A, B, C, D CORE-STREPTAVIDIN 1895
167 5IRU 1 A, B, C, D Avidin 9031
168 2CAM 1 A, B AVIDIN 9031
169 1LDO 1 A, B avidin 9031
170 1LCW 1 A, B Streptavidin 1895
171 1N4J 1 A Streptavidin core streptavidin, residues 13-139 1895
172 2A8G 1 A, B Avidin 9031
173 1SRH 1 A, B STREPTAVIDIN 1895
174 4BX7 1 A STREPTAVIDIN DEAD VARIANT 1895
175 4BX7 2 B STREPTAVIDIN 1895
176 1SWP 1 A, B, C, D CORE-STREPTAVIDIN 1895
177 1LCV 1 A, B streptavidin 1895
178 3VHH 1 A, B, C, D Avidin UNP residues 25-147 9031
179 4I60 1 A Avidin 9031
180 4BJ8 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P ZEBAVIDIN 7955
181 1SLD 1 B STREPTAVIDIN 1895
182 1AVD 1 A, B AVIDIN 9031
183 5HLM 1 A, B, C, D Avidin 9031
184 1AVE 1 A, B AVIDIN 9031
185 5LUR 1 A, B Avidin 9031
186 2AVI 1 A, B AVIDIN 9031
187 2A5B 1 A, B Avidin 9031
188 2A5C 1 A, B Avidin 9031
189 1LDQ 1 A, B Avidin 9031
190 3MM0 1 A, B, C, D, E, F, G, H, I, K, M, N Avidin, Avidin-related protein 4/5 SEE REMARK 999 FOR CHIMERA ASSEMBLY INFORMATION P02701 Residues 25-61, 85-152 and P56734 residues 62-82 9031
191 1LEL 1 A, B Avidin 9031
192 1RXH 1 A, B Streptavidin 1895
193 3FDC 1 A, B Avidin 9031
194 6J6J 1 A, B, C, D Streptavidin 1895
195 6J6K 1 A, B, C, D Streptavidin 1895
196 2MF6 1 A, B, C, D Avidin, Avidin-related protein 4/5 chimera of Avidin and Avidin-related protein 4/5 P02701 Residues 25-61, 85-152 and P56734 residues 62-82 9031