Sequence Similarity Clusters for the Entities in PDB 3MJ8

Entity #1 | Chains: A,L
STIMULATORY HAMSTER ANTIBODY HL4E10 FAB LIGHT CHAIN protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 33468
95 % 2 2 29974 Flexibility: Medium
Max RMSD: 6.1, Avg RMSD: 4.1
PDBFlex
90 % 2 2 28882
70 % 2 2 26052
50 % 4754 6341 1
40 % 4754 6341 1
30 % 4788 6387 1
Entity #2 | Chains: B,H
STIMULATORY HAMSTER ANTIBODY HL4E10 FAB HEAVY CHAIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34500
95 % 2 2 26739 Flexibility: Medium
Max RMSD: 7.3, Avg RMSD: 4.9
PDBFlex
90 % 2 2 25850
70 % 2278 3036 1
50 % 4755 6341 1
40 % 4755 6341 1
30 % 4789 6387 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures