Sequence Similarity Clusters for the Entities in PDB 3LU9

Entity #1 | Chains: A,D
Prothrombin protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 2712
95 % 4 15 3344 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 4 15 3417
70 % 3 35 1272
50 % 4 42 1031
40 % 4 42 1076
30 % 4 42 1113
Entity #2 | Chains: B,E
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3035
95 % 138 362 79 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 136 360 83
70 % 138 391 81
50 % 138 391 103
40 % 138 393 121
30 % 907 1950 6
Entity #3 | Chains: C,F
Proteinase-activated receptor 1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55936
95 % 1 1 40274 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 38389
70 % 1 1 34045
50 % 1 1 29590
40 % 1 1 26896
30 % 1 1 23837

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures