Sequence Similarity Clusters for the Entities in PDB 3LRS

Entity #1 | Chains: A,C,E,H
PG-16 Heavy Chain Fab protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12206
95 % 1 4 5731 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 1.7
PDBFlex
90 % 1 4 5527
70 % 1282 2773 1
50 % 1356 2914 1
40 % 1356 2914 1
30 % 2691 5831 1
Entity #2 | Chains: B,D,F,L
PG-16 Light Chain Fab protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5148
95 % 1 4 5554 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 35 88 264
70 % 257 579 7
50 % 1320 2875 2
40 % 1320 2875 2
30 % 2692 5831 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures