Sequence Similarity Clusters for the Entities in PDB 3LP2

Entity #1 | Chains: A
Reverse transcriptase/ribonuclease H protein, length: 563 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 13 4785
95 % 214 282 105 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.7
PDBFlex
90 % 214 282 112
70 % 214 282 123
50 % 215 283 143
40 % 216 284 159
30 % 216 284 167
Entity #2 | Chains: B
p51 RT protein, length: 443 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 6541
95 % 209 276 111 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 209 276 119
70 % 209 276 127
50 % 210 277 153
40 % 211 278 166
30 % 211 278 173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures