Sequence Similarity Clusters for the Entities in PDB 3LL8

Entity #1 | Chains: E
AKAP79 peptide protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,C
Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 7293
95 % 4 12 5180 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 1.7
PDBFlex
90 % 4 12 5235
70 % 5 14 4206
50 % 5 15 3698
40 % 5 15 3693
30 % 5 15 3609
Entity #3 | Chains: B,D
Calcineurin subunit B type 1 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 15 3488
95 % 4 15 4261 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 4 15 4339
70 % 4 15 4324
50 % 5 19 3117
40 % 5 19 3131
30 % 5 19 3090

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures