Sequence Similarity Clusters for the Entities in PDB 3LIZ

Entity #1 | Chains: A
Aspartic protease Bla g 2 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30183
95 % 2 4 10462 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 4 10347
70 % 2 4 9990
50 % 2 4 9282
40 % 2 4 8849
30 % 10 162 207
Entity #2 | Chains: L
4C3 monoclonal antibody Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61938
95 % 1 19 3857
90 % 1 29 2479
70 % 213 2416 2
50 % 270 3067 2
40 % 270 3067 2
30 % 562 6228 1
Entity #3 | Chains: H
4C3 monoclonal antibody Heavy Chain protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61937
95 % 1 1 47543
90 % 1 1 45121
70 % 267 2965 1
50 % 286 3117 1
40 % 286 3117 1
30 % 563 6228 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YG9 1 A Aspartic protease Bla g 2 NIG2 6973 3.4.23 | Details
2 3LIZ 1 A Aspartic protease Bla g 2 6973 3.4.23 | Details
3 4RLD 1 A, B, C, D Aspartic protease Bla g 2 Bla G 2 6973 3.4.23 | Details
4 2NR6 1 A, B Aspartic protease Bla g 2 NIG2 6973 3.4.23 | Details