Sequence Similarity Clusters for the Entities in PDB 3LIZ

Entity #1 | Chains: A
Aspartic protease Bla g 2 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23953
95 % 2 4 10475 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 4 10396
70 % 2 4 10005
50 % 2 4 9308
40 % 2 4 8888
30 % 10 162 209
Entity #2 | Chains: L
4C3 monoclonal antibody Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62053
95 % 1 19 4041 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 1 4 16780
70 % 214 2418 2
50 % 271 3071 2
40 % 271 3071 2
30 % 564 6236 1
Entity #3 | Chains: H
4C3 monoclonal antibody Heavy Chain protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62052
95 % 1 1 47663
90 % 1 1 45171
70 % 268 2969 1
50 % 287 3121 1
40 % 287 3121 1
30 % 565 6236 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YG9 1 A Aspartic protease Bla g 2 NIG2 6973 3.4.23 | Details
2 3LIZ 1 A Aspartic protease Bla g 2 6973 3.4.23 | Details
3 2NR6 1 A, B Aspartic protease Bla g 2 NIG2 6973 3.4.23 | Details