Sequence Similarity Clusters for the Entities in PDB 3LIZ

Entity #1 | Chains: A
Aspartic protease Bla g 2 protein, length: 334 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 30064
95 % 2 4 10445 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 4 10323
70 % 2 4 9964
50 % 2 4 9248
40 % 2 4 8830
30 % 10 162 209
Entity #2 | Chains: L
4C3 monoclonal antibody Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76878
95 % 1 19 4015
90 % 1 4 16707
70 % 208 2399 2
50 % 265 3045 2
40 % 265 3045 2
30 % 552 6183 1
Entity #3 | Chains: H
4C3 monoclonal antibody Heavy Chain protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61787
95 % 1 1 47445
90 % 1 1 45026
70 % 262 2943 1
50 % 281 3094 1
40 % 281 3094 1
30 % 553 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures