Sequence Similarity Clusters for the Entities in PDB 3LHP

Entity #1 | Chains: H,I
Fv 4E10 heavy chain protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 12718
95 % 4 4 7869 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 4 4 7835
70 % 10 17 1922
50 % 599 877 4
40 % 602 894 5
30 % 864 1317 5
Entity #2 | Chains: L,M
Fv 4E10 light chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6457
95 % 4 4 7430 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 4 4 7125
70 % 58 91 174
50 % 243 399 20
40 % 249 406 24
30 % 865 1317 5
Entity #3 | Chains: S,T
4E10_D0_1ISEA_004_N (T93) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46716
95 % 1 1 36122 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 40252
70 % 1 2 24512
50 % 3 4 15289
40 % 3 4 14216
30 % 6 7 5797

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures