Sequence Similarity Clusters for the Entities in PDB 3LEY

Entity #1 | Chains: H
6a7 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 85803
95 % 2 2 25965 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 8 11 5545
70 % 535 2965 1
50 % 568 3117 1
40 % 568 3117 1
30 % 1120 6228 1
Entity #2 | Chains: L
6a7 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82983
95 % 15 39 1105 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.9
PDBFlex
90 % 17 55 783
70 % 439 2416 2
50 % 545 3067 2
40 % 545 3067 2
30 % 1121 6228 1
Entity #3 | Chains: P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NCW 1 L IMMUNOGLOBULIN IGG2A Antibody FAB fragment 4C6, light chain 10090
2 1RUP 1 L immunoglobulin igg2a, heavy chain fab 10090
3 1RUK 1 L immunoglobulin igg2a, light chain fab 10090
4 1RUM 1 L immunoglobulin igg2a, light chain fab 10090
5 2W60 2 B ANTI-CITRULLINATED COLLAGEN TYPE II FAB ACC4 10090
6 5MYX 1 A, C Fab c#24 light chain 10090
7 5MYO 1 A, C Fab c#6 light chain 10090
8 4K23 2 L anti-uPAR antibody, light chain 10090
9 1RUA 1 L immunoglobulin igg2a, light chain fab 10090
10 3SGE 1 I, L Light Chain 10090
11 3LEX 2 B, L 11f10 Antibody Light Chain 10090
12 4ONF 2 L 3D6 FAB ANTIBODY LIGHT CHAIN 10090
13 4OKV 2 B, D light chain of 8H7 mAb 10090
14 1RUL 1 L immunoglobulin igg2a, light chain fab 10090
15 3LEY 2 L 6a7 Antibody Light Chain 10090
16 3O6K 1 L 11H6H1 Fab' light chain 10090
17 3O6L 1 L 11H6H1 Fab' light chain 10090
18 5CP3 1 A Light Chain of Antigen-Binding Fragment of Monoclonal Antibody of 4C7 10090
19 1F8T 1 L ANTIBODY FAB FRAGMENT (LIGHT CHAIN) 10090
20 4ONG 2 L 3D6 FAB ANTIBODY LIGHT CHAIN 10090
21 3SGD 1 I, L Light Chain 10090
22 1F90 1 L FAB FRAGMENT OF MONOCLONAL ANTIBODY 10090
23 6BPD 2 B Monoclonal antibody 10B12 Fab light chain 10090
24 2W65 2 B, D ANTI-CITRULLINATED COLLAGEN TYPE II FAB ACC4 10090
25 1RU9 1 L immunoglobulin igg2a, light chain fab 10090
26 3O6M 1 L 11H6H1 Fab' light chain 10090
27 6DCA 1 L, M, N, O Fab light chain 10090
28 4PB0 2 L Ab53 light chain 10090
29 1TQB 3 C VRQ14 Fab light chain VRQ14 Fab fragment 10090
30 1TPX 3 C the VRQ14 Fab residues (1-214) 10090
31 1ND0 1 A, C, E, G IMMUNOGLOBULIN IGG2A IMMUNOGLOBULIN FAB FRAGMENT, light chain 10090
32 4QT5 1 A, L 3BD10 mouse monoclonal antibody, light chain 10090
33 1NLD 1 L FAB1583 10090
34 5WTT 2 B, L Light chain of 093G9 Fab 9606
35 1TQC 3 C VRQ14 Fab light chain VRQ14 Fab fragment 10090
36 4LU5 3 L, M Murine IgG2a A20G2 Light chain Fab domain 10090
37 1S5I 1 L Fab-fragment of monoclonal antibody 10090
38 5CP7 1 A, C, E, G Light Chain of Antigen-Binding Fragment of Monoclonal Antibody of 4C7 10090
39 4K24 4 L anti-uPAR antibody, light chain 10090