Sequence Similarity Clusters for the Entities in PDB 3LEY

Entity #1 | Chains: H
6a7 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 85803
95 % 2 2 25965 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 8 11 5545
70 % 535 2965 1
50 % 568 3117 1
40 % 568 3117 1
30 % 1120 6228 1
Entity #2 | Chains: L
6a7 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82983
95 % 15 39 1105 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.9
PDBFlex
90 % 17 55 783
70 % 439 2416 2
50 % 545 3067 2
40 % 545 3067 2
30 % 1121 6228 1
Entity #3 | Chains: P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NCW 1 L IMMUNOGLOBULIN IGG2A Antibody FAB fragment 4C6, light chain 10090
2 1RUP 1 L immunoglobulin igg2a, heavy chain fab 10090
3 1RUK 1 L immunoglobulin igg2a, light chain fab 10090
4 1RUM 1 L immunoglobulin igg2a, light chain fab 10090
5 2W60 2 B ANTI-CITRULLINATED COLLAGEN TYPE II FAB ACC4 10090
6 5MYX 1 A, C Fab c#24 light chain 10090
7 5MYO 1 A, C Fab c#6 light chain 10090
8 4K23 2 L anti-uPAR antibody, light chain 10090
9 1RUA 1 L immunoglobulin igg2a, light chain fab 10090
10 3SGE 1 I, L Light Chain 10090
11 3LEX 2 B, L 11f10 Antibody Light Chain 10090
12 4ONF 2 L 3D6 FAB ANTIBODY LIGHT CHAIN 10090
13 4OKV 2 B, D light chain of 8H7 mAb 10090
14 1CR9 1 L FAB ANTIBODY LIGHT CHAIN HEAVY CHAIN 10090
15 1YEJ 1 L PROTEIN (IG ANTIBODY D2.3 (LIGHT CHAIN)) ANTIGEN BINDING FRAGMENT 10090
16 1RUL 1 L immunoglobulin igg2a, light chain fab 10090
17 3LEY 2 L 6a7 Antibody Light Chain 10090
18 1YEI 1 L PROTEIN (IG ANTIBODY D2.3 (LIGHT CHAIN)) ANTIGEN BINDING DOMAIN 10090
19 1YEC 1 L IGG2A FAB FRAGMENT (D2.3) CATALYTIC ANTIBODY, TRANSITION STATE ANALOGUE 10090
20 1KN2 1 L IG ANTIBODY D2.3 (LIGHT CHAIN) 10090
21 1KN4 1 L IG ANTIBODY D2.3 (LIGHT CHAIN) 10090
22 1YEF 1 L IGG2A FAB FRAGMENT STRUCTURE OF IGG2A FAB FRAGMENT (D2.3) 10090
23 1YEG 1 L IGG2A FAB FRAGMENT STRUCTURE OF IGG2A FAB FRAGMENT (D2.3) 10090
24 3O6K 1 L 11H6H1 Fab' light chain 10090
25 3O6L 1 L 11H6H1 Fab' light chain 10090
26 5CP3 1 A Light Chain of Antigen-Binding Fragment of Monoclonal Antibody of 4C7 10090
27 1F8T 1 L ANTIBODY FAB FRAGMENT (LIGHT CHAIN) 10090
28 1YEK 1 L PROTEIN (IG ANTIBODY D2.3 (LIGHT CHAIN)) ANTIGEN BINDING FRAGMENT 10090
29 4ONG 2 L 3D6 FAB ANTIBODY LIGHT CHAIN 10090
30 2C1P 1 A, L IGK-C PROTEIN 10090
31 3SGD 1 I, L Light Chain 10090
32 1YEE 1 L IGG2A FAB FRAGMENT (D2.5) TRANSITION STATE ANALOGUE 10090
33 5DYO 2 B, L Fab 43.1 Light Chain 10090
34 1F90 1 L FAB FRAGMENT OF MONOCLONAL ANTIBODY 10090
35 6BPD 2 B Monoclonal antibody 10B12 Fab light chain 10090
36 2W65 2 B, D ANTI-CITRULLINATED COLLAGEN TYPE II FAB ACC4 10090
37 1YEH 1 L FAB FRAGMENT IG GAMMA-2A CHAIN C REGION (D2.3) 10090
38 1RU9 1 L immunoglobulin igg2a, light chain fab 10090
39 3O6M 1 L 11H6H1 Fab' light chain 10090
40 6DCA 1 L, M, N, O Fab light chain 10090
41 4PB0 2 L Ab53 light chain 10090
42 1CU4 1 L FAB LIGHT CHAIN FAB ANTIBODY 3F4, LIGHT CHAIN 10090
43 1TQB 3 C VRQ14 Fab light chain VRQ14 Fab fragment 10090
44 1TPX 3 C the VRQ14 Fab residues (1-214) 10090
45 1ND0 1 A, C, E, G IMMUNOGLOBULIN IGG2A IMMUNOGLOBULIN FAB FRAGMENT, light chain 10090
46 4QT5 1 A, L 3BD10 mouse monoclonal antibody, light chain 10090
47 2G2R 1 A, L Green-fluorescent antibody (11G10)-light chain 10090
48 1NLD 1 L FAB1583 10090
49 5WTT 2 B, L Light chain of 093G9 Fab 9606
50 1TQC 3 C VRQ14 Fab light chain VRQ14 Fab fragment 10090
51 4LU5 3 L, M Murine IgG2a A20G2 Light chain Fab domain 10090
52 1YED 1 A, L IGG1 FAB FRAGMENT (D.2.4) TRANSITION STATE ANALOGUE 10090
53 1S5I 1 L Fab-fragment of monoclonal antibody 10090
54 5CP7 1 A, C, E, G Light Chain of Antigen-Binding Fragment of Monoclonal Antibody of 4C7 10090
55 4K24 4 L anti-uPAR antibody, light chain 10090