Sequence Similarity Clusters for the Entities in PDB 3LEY

Entity #1 | Chains: H
6a7 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 85803
95 % 2 2 25965 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 8 11 5545
70 % 535 2965 1
50 % 568 3117 1
40 % 568 3117 1
30 % 1120 6228 1
Entity #2 | Chains: L
6a7 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82983
95 % 15 39 1105 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.9
PDBFlex
90 % 17 55 783
70 % 439 2416 2
50 % 545 3067 2
40 % 545 3067 2
30 % 1121 6228 1
Entity #3 | Chains: P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3LEX 1 A, H 11f10 Antibody Heavy Chain 10090
2 3LEY 1 H 6a7 Antibody Heavy Chain 10090