Sequence Similarity Clusters for the Entities in PDB 3LEY

Entity #1 | Chains: H
6a7 Antibody Heavy Chain protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82738
95 % 2 2 28087 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 8 11 5519
70 % 528 2928 1
50 % 561 3079 1
40 % 561 3079 1
30 % 1106 6153 1
Entity #2 | Chains: L
6a7 Antibody Light Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 86120
95 % 2 3 19004 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.9
PDBFlex
90 % 17 55 781
70 % 432 2391 2
50 % 538 3030 2
40 % 538 3030 2
30 % 1107 6153 1
Entity #3 | Chains: P
Envelope glycoprotein gp41 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures