Sequence Similarity Clusters for the Entities in PDB 3LEV

Entity #1 | Chains: A
RNA polymerase sigma factor protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 35201
95 % 1 2 28383 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 2 27400
70 % 1 2 24785
50 % 1 2 21789
40 % 1 2 19922
30 % 1 2 17861
Entity #2 | Chains: L
2F5 ANTIBODY LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 12639
95 % 27 41 1624 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 27 41 1644
70 % 1188 2399 2
50 % 1493 3045 2
40 % 1493 3045 2
30 % 3052 6183 1
Entity #3 | Chains: H
2F5 ANTIBODY HEAVY CHAIN protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 22949
95 % 27 41 1619 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 27 41 1650
70 % 1455 2943 1
50 % 1540 3094 1
40 % 1540 3094 1
30 % 3053 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures