Sequence Similarity Clusters for the Entities in PDB 3KXF

Entity #1 | Chains: A,C,I,K
HLA class I histocompatibility antigen, B-35 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18821
95 % 116 122 297 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 224 231 148
70 % 769 816 6
50 % 771 821 8
40 % 814 865 9
30 % 831 889 12
Entity #2 | Chains: B,F,J,L
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 650 702 2
95 % 697 751 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 713 767 3
70 % 991 1070 4
50 % 1009 1094 4
40 % 1009 1094 4
30 % 1009 1094 7
Entity #3 | Chains: D,G,M,N
SB27 T cell receptor alpha chain protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25912
95 % 3 3 9340 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 3 4 8569
70 % 19 23 1914
50 % 332 394 76
40 % 332 394 89
30 % 332 394 90
Entity #4 | Chains: E,H,O,P
SB27 T cell receptor beta chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27919
95 % 32 33 974 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.2
PDBFlex
90 % 75 81 400
70 % 325 381 43
50 % 339 403 64
40 % 339 403 80
30 % 339 403 85
Entity #5 | Chains: Q,R,S,T
peptide from Trans-activator protein BZLF1 protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6BJ8 4 H TCR 55 beta chain 9606
2 4L4V 4 E, H MAIT T-cell receptor beta chain 9606
3 5U6Q 3 E, G MAIT T-cell receptor beta chain 9606
4 4PJE 4 F, H TCR-beta 9606
5 6BJ3 4 H TCR 55 beta chain 9606
6 4PJH 4 F, H TCR-beta 9606
7 5U16 4 F, H MAIT T-cell receptor beta chain 9606
8 4PJ5 4 E, H TCR-beta 9606
9 4L4T 4 E, H MAIT T-cell receptor beta chain 9606
10 4NQE 4 E, H TCR beta 9606
11 5U17 3 E, G MAIT T-cell receptor beta chain 9606
12 5U2V 4 F, H MAIT T-cell receptor beta chain 9606
13 4PJX 4 F, H TCR-beta 9606
14 4NQD 4 E, H TCR beta chain 9606
15 4PJG 4 F, H TCR-beta 9606
16 4LCW 4 E, H MAIT T cell receptor beta chain 9606
17 4NQC 4 E, H TCR beta chain 9606
18 4PJC 4 F, H TCR-beta 9606
19 4JRX 5 E CA5 TCR beta chain 9606
20 4PJF 4 F, H TCR-beta 9606
21 5U72 3 E, G MAIT T-cell receptor beta chain 9606
22 4PJI 4 F, H TCR-beta 9606
23 4PJA 4 F, H TCR-beta 9606
24 4PJD 4 F, H TCR-beta 9606
25 4PJB 4 F, H TCR-beta 9606
26 5U1R 3 E, G MAIT T-cell receptor beta chain 9606
27 5XOT 5 E The beta chain of TU55 TCR 9606
28 2AK4 5 E, J, P, U SB27 T cell receptor beta chain Extracellular Domain 9606
29 4IIQ 2 B Human Mucosal Associated Invariant T cell receptor beta chain 9606
30 4Z7W 4 F, H T-CELL RECEPTOR, T316 BETA CHAIN 9606
31 4L8S 2 B Muccosal Associated Invariant T Cell Receptor beta chain 9606
32 3KXF 4 E, H, O, P SB27 T cell receptor beta chain 9606
33 4LCC 3 B Human MAIT TCR beta chain 9606