Sequence Similarity Clusters for the Entities in PDB 3KDF

Entity #1 | Chains: A,C
Replication protein A 14 kDa subunit protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14989
95 % 1 3 14824 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 3 15594
70 % 1 3 13526
50 % 1 3 12299
40 % 1 3 11487
30 % 1 3 10559
Entity #2 | Chains: B,D
Replication protein A 32 kDa subunit protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9942
95 % 1 4 10349 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 4 10400
70 % 1 4 9892
50 % 1 4 9285
40 % 1 4 8895
30 % 1 7 5452

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures