Sequence Similarity Clusters for the Entities in PDB 3JSV

Entity #1 | Chains: A
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 20 1502
95 % 308 490 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 317 504 6
70 % 357 555 9
50 % 359 570 10
40 % 359 574 12
30 % 370 591 20
Entity #2 | Chains: B
Ubiquitin protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 248 393 4
95 % 309 490 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 318 504 6
70 % 358 555 9
50 % 360 570 10
40 % 360 574 12
30 % 371 591 20
Entity #3 | Chains: C,D
NF-kappa-B essential modulator protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11190
95 % 2 5 6780 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 2.1
PDBFlex
90 % 2 5 7705
70 % 2 5 6530
50 % 2 5 6250
40 % 3 7 3763
30 % 3 7 3675

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures