Sequence Similarity Clusters for the Entities in PDB 3J6E

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q
Tubulin alpha-1A chain protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 28 421
95 % 223 247 12
90 % 224 248 15
70 % 235 259 21
50 % 235 259 43
40 % 470 518 8
30 % 478 526 11
Entity #2 | Chains: B,D,F,H,J,L,N,P,R
Tubulin beta chain protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 85 76
95 % 221 244 14
90 % 228 251 14
70 % 236 259 20
50 % 236 259 42
40 % 471 518 8
30 % 479 526 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5XXT 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain UNP residues 2-439 9823
2 5XXV 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain UNP residues 2-439 9823
3 5XXW 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain UNP residues 2-439 9823
4 5XXX 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain UNP residues 2-439 9823
5 5MM4 2 A Tubulin alpha-1A chain 9823
6 5MM7 2 A Tubulin alpha-1A chain 9823
7 5M5N 1 A Tubulin alpha-1D chain 9913
8 5M5O 1 A Tubulin alpha-1D chain 9913
9 5M5C 2 A, D Tubulin alpha chain 9913
10 5M5L 1 A Tubulin alpha-1D chain 9913
11 5M5M 1 A Tubulin alpha-1D chain 9913
12 5M50 1 A, D Tubulin alpha chain 9913
13 5M54 2 A, D Tubulin alpha chain 9913
14 5HNY 1 A Tubulin alpha-1B chain UNP residues 2-439 9913
15 3J6H 1 A Tubulin alpha-1A chain UNP residues 2-437 9823
16 3J6F 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain 9823
17 3J6G 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain 9823
18 3J6E 1 A, C, E, G, I, K, M, O, Q Tubulin alpha-1A chain 9823
19 4CK5 1 A TUBULIN ALPHA-1D CHAIN 9913
20 4CK6 1 A TUBULIN ALPHA-1D CHAIN 9913
21 4CK7 1 A TUBULIN ALPHA-1D CHAIN 9913
22 4ATX 2 B TUBULIN ALPHA-1D CHAIN 9913 3.6.5.6 | Details
23 4ATU 2 B, D, F, H TUBULIN ALPHA-1D CHAIN 9913 3.6.5.6 | Details
24 4AQV 1 A TUBULIN ALPHA-1D CHAIN 9913
25 4AQW 1 A TUBULIN ALPHA-1D CHAIN 9913
26 2XRP 2 B, D, F, H TUBULIN ALPHA-1D CHAIN 9913 3.6.5.6 | Details
27 1TVK 1 A Tubulin alpha chain see REMARK 400 9913
28 1TUB 1 A TUBULIN 9823