Sequence Similarity Clusters for the Entities in PDB 3J6E

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q
Tubulin alpha-1A chain protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 28 415
95 % 221 245 13
90 % 222 246 15
70 % 232 256 21
50 % 232 256 45
40 % 464 512 8
30 % 472 520 11
Entity #2 | Chains: B,D,F,H,J,L,N,P,R
Tubulin beta chain protein, length: 427 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 85 74
95 % 219 242 14
90 % 226 249 13
70 % 233 256 20
50 % 233 256 43
40 % 465 512 8
30 % 473 520 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures