3J45

Structure of a non-translocating SecY protein channel with the 70S ribosome


Sequence Similarity Clusters for the Entities in PDB 3J45

Entity #1 | Chains: y
Protein translocase subunit SecY protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 14620
95 % 6 8 11641
90 % 6 10 7617
70 % 6 8 11716
50 % 6 8 10769
40 % 14 18 3869
30 % 14 18 3900
Entity #10 | Chains: 4
23S ribosomal RNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: 5
23S ribosomal RNA rna, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
Preprotein translocase subunit SecE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56419
95 % 1 2 38488
90 % 1 2 36684
70 % 1 2 32623
50 % 1 2 28468
40 % 1 2 25922
30 % 1 2 23070
Entity #3 | Chains: G
Protein-export membrane protein SecG protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56418
95 % 2 5 13924
90 % 2 5 14241
70 % 2 5 13187
50 % 2 5 11783
40 % 2 5 11052
30 % 2 5 10538
Entity #4 | Chains: T
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 275 105
95 % 249 275 138
90 % 249 275 144
70 % 249 275 169
50 % 253 279 189
40 % 544 577 48
30 % 544 577 53
Entity #5 | Chains: U
50S ribosomal protein L24 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 274 108
95 % 249 274 141
90 % 249 274 146
70 % 249 274 174
50 % 525 555 40
40 % 525 557 56
30 % 525 557 62
Entity #6 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 249 275 106
95 % 249 275 139
90 % 249 275 143
70 % 249 275 170
50 % 259 285 185
40 % 465 494 71
30 % 490 520 70
Entity #7 | Chains: 1
23S ribosomal RNA rna, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: 2
23S ribosomal RNA rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: 3
23S ribosomal RNA rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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