Sequence Similarity Clusters for the Entities in PDB 3J45

Entity #1 | Chains: y
Protein translocase subunit SecY protein, length: 437 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 14191
95 % 5 7 11654
90 % 5 9 7168
70 % 5 7 11399
50 % 5 7 10425
40 % 12 16 3532
30 % 12 16 3590
Entity #10 | Chains: 4
23S ribosomal RNA rna, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: 5
23S ribosomal RNA rna, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
Preprotein translocase subunit SecE protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 45154
95 % 1 2 37784
90 % 1 2 36100
70 % 1 2 26906
50 % 1 2 26305
40 % 1 2 22339
30 % 1 2 19942
Entity #3 | Chains: G
Protein-export membrane protein SecG protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 42722
95 % 2 5 11858
90 % 2 5 11721
70 % 2 5 11194
50 % 2 5 10242
40 % 2 5 9657
30 % 2 5 8941
Entity #4 | Chains: T
50S ribosomal protein L23 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 176 117
95 % 150 176 157
90 % 150 176 168
70 % 150 176 189
50 % 150 176 214
40 % 150 176 234
30 % 150 176 248
Entity #5 | Chains: U
50S ribosomal protein L24 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 175 119
95 % 150 175 159
90 % 150 175 172
70 % 150 175 192
50 % 373 403 55
40 % 373 403 70
30 % 373 405 74
Entity #6 | Chains: Y
50S ribosomal protein L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 176 116
95 % 150 176 155
90 % 150 176 166
70 % 150 176 187
50 % 150 176 213
40 % 335 364 85
30 % 361 390 80
Entity #7 | Chains: 1
23S ribosomal RNA rna, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: 2
23S ribosomal RNA rna, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: 3
23S ribosomal RNA rna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures