Sequence Similarity Clusters for the Entities in PDB 3J0L

Entity #1 | Chains: a
40S ribosomal RNA fragment rna, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: h
40S ribosomal RNA fragment rna, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: T
Ribosomal protein S5 protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 10750
95 % 4 4 11540
90 % 4 4 10172
70 % 4 4 11284
50 % 179 182 230
40 % 179 182 243
30 % 179 182 256
Entity #12 | Chains: K
Ribosomal protein S14 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 11285
95 % 4 4 10586
90 % 4 4 10474
70 % 175 179 230
50 % 176 180 238
40 % 176 180 250
30 % 176 180 266
Entity #13 | Chains: L
Ribosomal protein S23 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 8158
95 % 6 6 8352
90 % 6 6 8287
70 % 183 185 213
50 % 189 191 224
40 % 189 191 233
30 % 189 191 242
Entity #14 | Chains: X
Ribosomal protein S30 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20763
95 % 4 4 19630
90 % 4 4 19173
70 % 4 4 17795
50 % 4 4 15949
40 % 4 4 14787
30 % 4 4 13406
Entity #15 | Chains: S
Ribosomal protein S15 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20679
95 % 4 4 19478
90 % 4 4 19041
70 % 4 4 17687
50 % 4 4 15854
40 % 4 4 14709
30 % 4 4 13338
Entity #16 | Chains: 1
60S ribosomal RNA fragment rna, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #17 | Chains: 2
60S ribosomal RNA fragment rna, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #18 | Chains: 3
60S ribosomal RNA fragment rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #19 | Chains: 4
60S ribosomal RNA fragment rna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: b
40S ribosomal RNA fragment rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: 5
60S ribosomal RNA fragment rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #21 | Chains: 6
60S ribosomal RNA fragment rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: 7
60S ribosomal RNA fragment rna, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: 8
60S ribosomal RNA fragment rna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #24 | Chains: B
Ribosomal protein L10a protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 27 1928
95 % 23 27 2516
90 % 24 28 2483
70 % 24 28 2555
50 % 54 58 1169
40 % 54 58 1206
30 % 54 58 1246
Entity #25 | Chains: J
Ribosomal protein L10 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 75 333
95 % 74 75 449
90 % 75 76 476
70 % 75 76 508
50 % 159 161 309
40 % 159 161 323
30 % 159 161 341
Entity #26 | Chains: F
Ribosomal protein L36a protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 83 86 307
95 % 83 86 408
90 % 84 87 423
70 % 153 157 281
50 % 165 169 287
40 % 165 169 298
30 % 166 170 319
Entity #27 | Chains: V,W,Y
tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #28 | Chains: v,y
mRNA fragment rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #29 | Chains: w
mRNA fragment rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: c
40S ribosomal RNA fragment rna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: d
40S ribosomal RNA fragment rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: e
40S ribosomal RNA fragment rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: E
40S ribosomal RNA fragment rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: f
40S ribosomal RNA fragment rna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: g
40S ribosomal RNA fragment rna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #9 | Chains: G
40S ribosomal RNA fragment rna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures