Sequence Similarity Clusters for the Entities in PDB 3IXT

Entity #1 | Chains: B,L
Motavizumab Fab light chain protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6822
95 % 5 7 5472 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.5
PDBFlex
90 % 327 538 4
70 % 1541 2391 2
50 % 1926 3030 2
40 % 1926 3030 2
30 % 3913 6153 1
Entity #2 | Chains: A,H
Motavizumab Fab heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 9985
95 % 4 6 5866 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.9
PDBFlex
90 % 5 7 5595
70 % 1860 2928 1
50 % 1962 3079 1
40 % 1962 3079 1
30 % 3914 6153 1
Entity #3 | Chains: C,P
Fusion glycoprotein F1 protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52562
95 % 1 1 35839 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 38209
70 % 1 1 30896
50 % 1 1 26933
40 % 1 1 24529
30 % 1 1 21821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures