Sequence Similarity Clusters for the Entities in PDB 3IPQ

Entity #1 | Chains: A
Oxysterols receptor LXR-alpha protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7532
95 % 2 10 3871 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 10 3906
70 % 2 22 1258
50 % 2 22 1303
40 % 2 24 1229
30 % 2 29 1154
Entity #2 | Chains: B
Nuclear receptor coactivator 1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 19 1355
95 % 5 19 1723
90 % 5 19 1770
70 % 5 19 1799
50 % 5 19 1846
40 % 5 19 1894
30 % 5 19 1921

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures