Sequence Similarity Clusters for the Entities in PDB 3IPM

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome subunit alpha protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 15 179
95 % 8 15 239
90 % 8 15 254
70 % 8 15 285
50 % 10 18 264
40 % 1039 1144 3
30 % 1811 1989 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome subunit beta protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 13 199
95 % 8 13 272
90 % 8 13 285
70 % 8 13 322
50 % 9 15 308
40 % 9 15 321
30 % 534 557 12
Entity #3 | Chains: O,P,Q,R,S,T,U
Proteasome activator PA26, Proteasome-activating nucleotidase fusion protein protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 10252
95 % 9 9 587
90 % 9 9 614
70 % 9 9 661
50 % 9 9 710
40 % 9 9 743
30 % 9 9 739

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.