Sequence Similarity Clusters for the Entities in PDB 3IPM

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome subunit alpha protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 16 172
95 % 8 16 235 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 8 16 247
70 % 8 16 281
50 % 10 19 242
40 % 1039 1149 3
30 % 1811 1997 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome subunit beta protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 14 190
95 % 8 14 253 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 8 14 269
70 % 8 14 306
50 % 9 16 282
40 % 9 16 303
30 % 534 560 13
Entity #3 | Chains: O,P,Q,R,S,T,U
Proteasome activator PA26, Proteasome-activating nucleotidase fusion protein protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10536
95 % 9 9 607 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 2.7
PDBFlex
90 % 9 9 636
70 % 9 9 681
50 % 9 9 729
40 % 9 9 759
30 % 9 9 758

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures