Sequence Similarity Clusters for the Entities in PDB 3IPM

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome subunit alpha protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 16 191
95 % 8 16 247 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 8 16 256
70 % 8 16 289
50 % 10 19 255
40 % 1039 1193 2
30 % 1811 2074 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome subunit beta protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 14 209
95 % 8 14 266 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 8 14 277
70 % 8 14 323
50 % 9 16 316
40 % 9 16 350
30 % 534 576 9
Entity #3 | Chains: O,P,Q,R,S,T,U
Proteasome activator PA26, Proteasome-activating nucleotidase fusion protein protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 11760
95 % 9 9 621 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 2.7
PDBFlex
90 % 9 9 648
70 % 9 9 699
50 % 9 9 753
40 % 9 9 784
30 % 9 9 789

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures