Sequence Similarity Clusters for the Entities in PDB 3IPM

Entity #1 | Chains: A,B,C,D,E,F,G
Proteasome subunit alpha protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 183
95 % 8 15 242 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 8 15 259
70 % 8 15 291
50 % 10 18 267
40 % 1039 1144 3
30 % 1811 1989 3
Entity #2 | Chains: H,I,J,K,L,M,N
Proteasome subunit beta protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 202
95 % 8 13 277 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 8 13 290
70 % 8 13 327
50 % 9 15 313
40 % 9 15 330
30 % 534 557 13
Entity #3 | Chains: O,P,Q,R,S,T,U
Proteasome activator PA26, Proteasome-activating nucleotidase fusion protein protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10409
95 % 9 9 597 Flexibility: Low
Max RMSD: 7.3, Avg RMSD: 2.7
PDBFlex
90 % 9 9 623
70 % 9 9 670
50 % 9 9 719
40 % 9 9 749
30 % 9 9 748

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.