Sequence Similarity Clusters for the Entities in PDB 3IOZ

Entity #1 | Chains: A
Protein Nef protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 19095
95 % 3 3 18498 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.1
PDBFlex
90 % 3 3 18119
70 % 3 3 16853
50 % 3 4 12910
40 % 3 4 12058
30 % 3 4 11050
Entity #2 | Chains: B
T-cell surface glycoprotein CD3 zeta chain protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71281
95 % 1 1 58472
90 % 1 1 55103
70 % 1 1 47983
50 % 1 1 41402
40 % 1 1 37404
30 % 1 1 32969

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures