Sequence Similarity Clusters for the Entities in PDB 3IDM

Entity #1 | Chains: A
2F5 Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 33 1483
95 % 22 41 1545 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 22 41 1577
70 % 993 2262 2
50 % 1257 2875 2
40 % 1257 2875 2
30 % 2562 5831 1
Entity #2 | Chains: B
2F5 Fab heavy chain protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 11629
95 % 22 41 1550 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 0.8
PDBFlex
90 % 22 41 1585
70 % 1219 2773 1
50 % 1291 2914 1
40 % 1291 2914 1
30 % 2563 5831 1
Entity #3 | Chains: C
gp41 MPER peptide analog protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures