Sequence Similarity Clusters for the Entities in PDB 3H3B

Entity #1 | Chains: A,B
Receptor tyrosine-protein kinase erbB-2 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38614
95 % 1 3 16313 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.0
PDBFlex
90 % 1 3 16069
70 % 1 3 15059
50 % 1 3 13576
40 % 1 3 12629
30 % 1 3 11523
Entity #2 | Chains: C,D
anti-ErbB2 antibody chA21 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55987
95 % 2 2 20656 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 2 2 23347
70 % 2 3 15530
50 % 15 40 794
40 % 17 41 875
30 % 2781 5899 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures