Sequence Similarity Clusters for the Entities in PDB 3H1C

Entity #1 | Chains: A,B,C,G,I,K,M,O,R,T,V,X
Polyribonucleotide nucleotidyltransferase protein, length: 549 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 6460
95 % 5 5 4469 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.2
PDBFlex
90 % 5 5 4513
70 % 5 5 4515
50 % 6 6 3282
40 % 6 6 3270
30 % 6 6 3227
Entity #2 | Chains: D,E,F,H,J,L,N,P,S,U,W,Y
Ribonuclease E protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 4422
95 % 3 3 5373 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 3 3 5409
70 % 3 3 5350
50 % 3 3 5173
40 % 3 3 5044
30 % 3 3 4846

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures