Sequence Similarity Clusters for the Entities in PDB 3GZN

Entity #1 | Chains: A,C
NEDD8-activating enzyme E1 regulatory subunit protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 17435
95 % 6 9 2613 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 9 2687
70 % 6 9 2702
50 % 6 9 2731
40 % 6 9 2770
30 % 6 9 2718
Entity #2 | Chains: B,D
NEDD8-activating enzyme E1 catalytic subunit protein, length: 463 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14188
95 % 5 8 2748 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.6
PDBFlex
90 % 5 8 2817
70 % 5 8 2780
50 % 5 8 2787
40 % 5 8 2802
30 % 5 8 2769
Entity #3 | Chains: I,J
NEDD8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 2093
95 % 7 11 3459 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 7 11 3523
70 % 10 18 1651
50 % 379 547 11
40 % 379 551 14
30 % 390 571 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures