Sequence Similarity Clusters for the Entities in PDB 3GO8

Entity #1 | Chains: A
Formamidopyrimidine-DNA glycosylase protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 86228
95 % 4 4 22584 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 18 43 1602
70 % 18 43 1639
50 % 18 43 1684
40 % 26 62 1067
30 % 26 62 1111
Entity #2 | Chains: B
5'-D(P*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*G)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
5'-D(*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*C)-3' dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3U6P 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
2 3GPU 1 A DNA glycosylase 1422 3.2.2.23 | Details
3 3JR5 1 A DNA glycosylase MutM 1422 3.2.2.23 | Details
4 3SAU 1 A DNA GLYCOSYLASE 1422 3.2.2.23 | Details
5 3GQ4 1 A DNA glycosylase 1422 3.2.2.23 | Details
6 1R2Z 3 A MutM 1422 3.2.2.23 | Details
7 3U6E 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
8 3U6S 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
9 3GPY 1 A DNA glycosylase 1422 3.2.2.23 | Details
10 3GPX 1 A DNA glycosylase 1422 3.2.2.23 | Details
11 4G4N 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
12 1L1Z 3 A MutM 1422 3.2.2.23 | Details
13 3U6C 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
14 3GQ3 1 A DNA glycosylase 1422 3.2.2.23 | Details
15 4G4Q 1 A Formamidopyrimidine-DNA glycosylase MutM 1422 3.2.2.23 | Details
16 3U6D 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
17 3U6O 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
18 3GO8 1 A Formamidopyrimidine-DNA glycosylase MutM 1422 3.2.2.23 | Details
19 1L1T 3 A MutM 1422 3.2.2.23 | Details
20 4G4R 1 A Formamidopyrimidine-DNA glycosylase MutM 1422 3.2.2.23 | Details
21 4G4O 1 A Formamidopyrimidine-DNA glycosylase MutM 1422 3.2.2.23 | Details
22 3U6L 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
23 3GQ5 1 A DNA glycosylase 1422 3.2.2.23 | Details
24 3SAR 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
25 3SAS 1 A DNA GLYCOSYLASE 1422 3.2.2.23 | Details
26 3U6Q 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
27 2F5N 3 A formamidopyrimidine-DNA glycosidase 1422 3.2.2.23 | Details
28 3GP1 1 A DNA glycosylase 1422 3.2.2.23 | Details
29 2F5P 3 A formamidopyrimidine-DNA glycosidase 1422 3.2.2.23 | Details
30 3SAV 1 A DNA GLYCOSYLASE 1422 3.2.2.23 | Details
31 3U6M 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
32 2F5O 3 A formamidopyrimidine-DNA glycosidase 1422 3.2.2.23 | Details
33 1L2D 3 A MutM 1422
34 3SBJ 1 A Formamidopyrimidine-DNA glycosylase 1422 3.2.2.23 | Details
35 3SAT 1 A DNA GLYCOSYLASE 1422 3.2.2.23 | Details
36 3GPP 1 A DNA glycosylase 1422 3.2.2.23 | Details
37 1L2C 3 A MutM 1422 3.2.2.23 | Details
38 3SAW 1 A DNA GLYCOSYLASE 1422 3.2.2.23 | Details
39 1R2Y 3 A MutM 1422 3.2.2.23 | Details
40 2F5Q 3 A formamidopyrimidine-DNA glycosidase 1422 3.2.2.23 | Details
41 1L2B 4 A MutM 1422 3.2.2.23 | Details
42 2F5S 3 A formamidopyrimidine-DNA glycosidase 1422 3.2.2.23 | Details
43 3JR4 1 A DNA glycosylase MutM 1422 3.2.2.23 | Details