Sequence Similarity Clusters for the Entities in PDB 3GJQ

Entity #1 | Chains: A,C
Caspase-3 subunit p17 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 951
95 % 38 40 1131 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 38 40 1182
70 % 38 40 1189
50 % 39 41 1200
40 % 44 48 917
30 % 44 48 955
Entity #2 | Chains: B,D
Caspase-3 subunit p12 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 3209
95 % 55 58 668 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.3
PDBFlex
90 % 55 58 699
70 % 47 50 876
50 % 62 67 541
40 % 62 68 567
30 % 62 68 591
Entity #3 | Chains: E,F
peptide inhibitor protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures