Sequence Similarity Clusters for the Entities in PDB 3GJN

Entity #1 | Chains: A,D
Colicin-E9 immunity protein protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54751
95 % 1 1 38918 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 15 20 2748
70 % 19 25 2192
50 % 31 40 1206
40 % 32 41 1158
30 % 32 41 1201
Entity #2 | Chains: B,C
Colicin-E7 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26357
95 % 13 15 2870 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 13 15 2950
70 % 33 37 1110
50 % 33 37 1141
40 % 36 40 1006
30 % 36 40 1051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VLQ 2 B COLICIN E9 DNASE DOMAIN, RESIDUES 450-582 562 3.1 | Details
2 2VLN 2 B COLICIN E9 DNASE DOMAIN, RESIDUES 450-582 562 3.1 | Details
3 2GZJ 2 B, F Colicin-E9 COLICIN E9,C-TERMINAL DOMAIN,DNASE DOMAIN 562
4 2GYK 2 B, F Colicin-E9 C-TERMINAL DOMAIN, DNASE DOMAIN 562
5 2GZG 2 B Colicin-E9 COLICIN E9,C-TERMINAL DOMAIN,DNASE DOMAIN 562
6 1FR2 2 B COLICIN E9 C-TERMINAL DOMAIN, DNASE DOMAIN 562
7 3U43 2 B Colicin-E2 DNase domain (UNP residues 449-581) 562 3.1 | Details
8 6ER6 1 B Endonuclease colEdes7 562
9 3ZFK 1 A, B COLICIN-E7 COLICIN E7 METALLONUCLEASE DOMAIN, RESIDUES 450-573 562 3.1 | Details
10 2GZF 2 B Colicin-E9 Colicin E9,C-terminal Domain,DNase Domain 562
11 2VLO 2 B COLICIN E9 DNASE DOMAIN, RESIDUES 450-582 562 3.1 | Details
12 2GZI 2 B Colicin-E9 COLICIN E9,C-TERMINAL DOMAIN,DNASE DOMAIN 562
13 1EMV 2 B COLICIN E9 C-TERMINAL DOMAIN, DNASE DOMAIN 562
14 2GZE 2 B Colicin-E9 Colicin E9,C-terminal Domain,DNase Domain 562
15 2WPT 2 B COLICIN-E9 562 3.1 | Details
16 1FSJ 1 B, C, D, E COLICIN E9 C-TERMINAL DOMAIN OF E9 COLICIN 562
17 2VLP 2 B COLICIN E9 DNASE DOMAIN, RESIDUES 450-582 562 3.1 | Details
18 1MZ8 2 B, D Colicin E7 nuclease domain 562 3.1 | Details
19 2JB0 2 B COLICIN E7 NUCLEASE DOMAIN, RESIDUES 446-576 562 3.1 | Details
20 1ZNV 2 B, D Colicin E7 Nuclease domain 562 3.1 | Details
21 1M08 1 A, B Colicin E7 Nuclease Domain 562 3.1 | Details
22 2JAZ 2 B, D COLICIN E7 NUCLEASE DOMAIN, RESIDUES 446-576 562 3.1 | Details
23 2ERH 2 B Colicin E7 562 3.1 | Details
24 1BXI 2 B PROTEIN (COLICIN E9) DNASE DOMAIN, RESIDUES 450-581 562 3.1 | Details
25 1V13 1 A, B COLICIN E9 562 3.1 | Details
26 2JBG 2 B, D COLICIN E7 NUCLEASE DOMAIN, RESIDUES 446-576 562 3.1 | Details
27 6ERE 1 A, B colicin 562
28 1UJZ 2 B Designed Colicin E7 DNase residues 446-573 562 3.1 | Details
29 3GKL 1 A, B Colicin-E9 immunity protein UNP residues 446-576 562 3.1 | Details
30 1PT3 2 A, B Colicin E7 residues 449-576 562 3.1 | Details
31 1V15 1 A, B, C, D COLICIN E9 C-TERMINAL DOMAIN, RESIDUES 450-582 562
32 2IVH 1 A COLCIN-E7 NUCLEASE DOMAIN, RESIDUES 449-576 562 3.1 | Details
33 3GJN 2 B, C Colicin-E7 UNP residues 446-576 562 3.1 | Details
34 1ZNS 2 A Colicin E7 nuclease domain 562 3.1 | Details
35 3FBD 1 A, D Colicin-E7 NUCLEASE DOMAIN 562 3.1 | Details
36 1V14 1 A, B, C, D COLICIN E9 C-TERMINAL DOMAIN, RESIDUES 450-582 562
37 2K5X 2 B Colicin-E9 UNP residues 450-582 562 3.1 | Details