Sequence Similarity Clusters for the Entities in PDB 3GJN

Entity #1 | Chains: A,D
Colicin-E9 immunity protein protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39425
95 % 1 1 33852 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 15 20 2713
70 % 19 25 2183
50 % 31 40 1205
40 % 32 41 1157
30 % 32 41 1197
Entity #2 | Chains: B,C
Colicin-E7 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26326
95 % 13 15 2867 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 13 15 2945
70 % 33 37 1130
50 % 33 37 1144
40 % 36 40 1005
30 % 36 40 1048

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3GKL 1 A, B Colicin-E9 immunity protein UNP residues 446-576 562 3.1 | Details
2 3GJN 2 B, C Colicin-E7 UNP residues 446-576 562 3.1 | Details