Sequence Similarity Clusters for the Entities in PDB 3GJN

Entity #1 | Chains: A,D
Colicin-E9 immunity protein protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54751
95 % 1 1 38918 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 15 20 2748
70 % 19 25 2192
50 % 31 40 1206
40 % 32 41 1158
30 % 32 41 1201
Entity #2 | Chains: B,C
Colicin-E7 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26357
95 % 13 15 2870 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 13 15 2950
70 % 33 37 1110
50 % 33 37 1141
40 % 36 40 1006
30 % 36 40 1051

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VLQ 1 A COLICIN-E9 IMMUNITY PROTEIN 562
2 2VLN 1 A COLICIN-E9 IMMUNITY PROTEIN 562
3 2GZJ 1 A, E Colicin-E9 immunity protein 562
4 2GYK 1 A, E Colicin-E9 immunity protein 562
5 2GZG 1 A Colicin-E9 immunity protein 562
6 1FR2 1 A COLICIN E9 IMMUNITY PROTEIN 562
7 3U43 1 A Colicin-E2 immunity protein 562
8 6ER6 2 A immunity Imdes7 562
9 2GZF 1 A Colicin-E9 immunity protein 562
10 4QKO 1 A, C, E, G Pyocin-S2 immunity protein 287
11 2VLO 1 A COLICIN-E9 IMMUNITY PROTEIN 562
12 1UNK 1 A, B, C, D COLICIN E7 562
13 2GZI 1 A Colicin-E9 immunity protein 562
14 1EMV 1 A IMMUNITY PROTEIN IM9 562
15 2GZE 1 A Colicin-E9 immunity protein 562
16 1CEI 1 A COLICIN E7 IMMUNITY PROTEIN 562
17 2WPT 1 A COLICIN-E2 IMMUNITY PROTEIN 562
18 2VLP 1 A COLICIN-E9 IMMUNITY PROTEIN 562
19 1AYI 1 A COLICIN E IMMUNITY PROTEIN 7 562
20 1MZ8 1 A, C Colicin E7 immunity protein 562
21 2JB0 1 A COLICIN E7 IMMUNITY PROTEIN 562 3.1 | Details
22 1ZNV 1 A, C Colicin E7 immunity protein 562
23 4UHP 2 B, D, F, H BACTERIOCIN IMMUNITY PROTEIN 287
24 2JAZ 1 A, C COLICIN E7 IMMUNITY PROTEIN 562 3.1 | Details
25 2ERH 1 A Colicin E7 immunity protein 562
26 1BXI 1 A PROTEIN (COLICIN E9 IMMUNITY PROTEIN) 562
27 2JBG 1 A, C COLICIN-E7 IMMUNITY PROTEIN 562 3.1 | Details
28 6ERE 2 C, D Immunity 562
29 1UJZ 1 A Designed Colicin E7 immunity protein 562
30 7CEI 1 A PROTEIN (COLICIN E7 IMMUNITY PROTEIN) 562
31 3GKL 2 C, D Colicin-E7 562
32 3GJN 1 A, D Colicin-E9 immunity protein 562
33 5EW5 2 E, F, G, H Colicin-E9 immunity protein 562
34 2K5X 1 A Colicin-E9 immunity protein 562
35 2K0D 1 X Colicin-E7 immunity protein 562
36 2NO8 1 A Colicin-E2 immunity protein 562
37 1GXH 1 A COLICIN E8 IMMUNITY PROTEIN 562
38 1GXG 1 A COLICIN E8 IMMUNITY PROTEIN IM8 IS THE IMMUNITY PROTEIN OF COLICIN E8 (DNASE) 562
39 1E0H 1 A IMMUNITY PROTEIN FOR COLICIN E9 BOUND TO COLICIN E9 DNASE DOMAIN 562
40 1IMP 1 A IM9 562
41 1IMQ 1 A IM9 562