Sequence Similarity Clusters for the Entities in PDB 3GJN

Entity #1 | Chains: A,D
Colicin-E9 immunity protein protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36800
95 % 1 1 33565 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 15 20 2722
70 % 19 25 2166
50 % 31 40 1193
40 % 32 41 1142
30 % 32 41 1184
Entity #2 | Chains: B,C
Colicin-E7 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26190
95 % 13 15 2879 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 13 15 2965
70 % 33 37 1102
50 % 33 37 1134
40 % 36 40 996
30 % 36 40 1041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures