Sequence Similarity Clusters for the Entities in PDB 3GHG

Entity #1 | Chains: A,D,G,J
Fibrinogen alpha chain protein, length: 562 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21067
95 % 1 1 20791 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.2
PDBFlex
90 % 1 1 20251
70 % 1 1 18733
50 % 1 1 16705
40 % 1 1 15450
30 % 1 1 13975
Entity #2 | Chains: B,E,H,K
Fibrinogen beta chain protein, length: 461 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15368
95 % 1 2 16089 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.5
PDBFlex
90 % 1 2 15843
70 % 1 2 14825
50 % 2 4 8100
40 % 2 4 7790
30 % 2 4 7276
Entity #3 | Chains: C,F,I,L
Fibrinogen gamma chain protein, length: 411 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23291
95 % 1 1 19261 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 2.4
PDBFlex
90 % 1 1 20250
70 % 1 2 9756
50 % 2 4 6320
40 % 2 4 6134
30 % 2 5 4643
Entity #4 | Chains: M,N,Q,R
A knob protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: O,P,S,T
B knob protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures