Sequence Similarity Clusters for the Entities in PDB 3FUB

Entity #1 | Chains: A,C
GDNF family receptor alpha-1 protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55597
95 % 1 1 39595 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 1 37782
70 % 1 1 33562
50 % 1 1 29177
40 % 1 1 26536
30 % 1 1 23510
Entity #2 | Chains: B,D
Glial cell line-derived neurotrophic factor protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15451
95 % 1 3 16309 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 4 9070
70 % 2 4 8081
50 % 2 4 8210
40 % 2 4 7884
30 % 2 4 7360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures