Sequence Similarity Clusters for the Entities in PDB 3FQD

Entity #1 | Chains: A
5'-3' exoribonuclease 2 protein, length: 899 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60736
95 % 1 1 51040
90 % 1 1 48311
70 % 1 1 42348
50 % 1 1 36629
40 % 1 1 33096
30 % 1 1 29219
Entity #2 | Chains: B
Protein din1 protein, length: 352 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41953
95 % 2 2 35760 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 2 2 31690
70 % 2 2 30584
50 % 2 2 26719
40 % 2 2 24244
30 % 2 2 21550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures