Sequence Similarity Clusters for the Entities in PDB 3FMP

Entity #1 | Chains: A,C
Nuclear pore complex protein Nup214 protein, length: 450 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 19653
95 % 4 4 18250 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 4 4 17890
70 % 4 4 16650
50 % 4 4 15024
40 % 4 4 13970
30 % 4 4 12713
Entity #2 | Chains: B,D
ATP-dependent RNA helicase DDX19B protein, length: 479 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57068
95 % 5 7 6384 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.4
PDBFlex
90 % 5 7 6428
70 % 5 7 6044
50 % 5 7 5847
40 % 5 7 5701
30 % 5 7 5429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures