Sequence Similarity Clusters for the Entities in PDB 3FCU

Entity #1 | Chains: A,C,E
Integrin, alpha 2b protein, length: 457 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 25 1226
95 % 19 26 1526 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 19 26 1547
70 % 19 26 1579
50 % 19 26 1641
40 % 23 30 1530
30 % 23 30 1573
Entity #2 | Chains: B,D,F
Integrin beta-3 protein, length: 461 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 26 1133
95 % 19 26 1522 Flexibility: Medium
Max RMSD: 10.5, Avg RMSD: 4.9
PDBFlex
90 % 19 26 1549
70 % 19 26 1584
50 % 21 32 1426
40 % 27 43 1081
30 % 27 45 1020

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures