Sequence Similarity Clusters for the Entities in PDB 3EYM

Entity #1 | Chains: A,C,E
Hemagglutinin HA1 chain protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 1578
95 % 22 50 308 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 24 54 305
70 % 53 97 205
50 % 64 109 200
40 % 196 391 14
30 % 196 391 19
Entity #2 | Chains: B,D,F
Hemagglutinin HA2 chain protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 18 1091
95 % 44 72 263 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.0
PDBFlex
90 % 50 90 229
70 % 100 187 82
50 % 192 377 11
40 % 192 377 16
30 % 197 388 23

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures