Sequence Similarity Clusters for the Entities in PDB 3EOA

Entity #1 | Chains: A,L
Efalizumab Fab fragment, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 20095
95 % 2 3 18802 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.8
PDBFlex
90 % 371 560 4
70 % 1720 2454 2
50 % 4349 6341 1
40 % 4349 6341 1
30 % 4381 6387 1
Entity #2 | Chains: B,H
Efalizumab Fab fragment, heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 18325
95 % 2 3 17423 Flexibility: Low
Max RMSD: 5.6, Avg RMSD: 2.4
PDBFlex
90 % 4 6 11352
70 % 2082 3036 1
50 % 4350 6341 1
40 % 4350 6341 1
30 % 4382 6387 1
Entity #3 | Chains: I,J
Integrin alpha-L protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 3753
95 % 24 29 1027 Flexibility: Low
Max RMSD: 9.3, Avg RMSD: 1.9
PDBFlex
90 % 24 29 1074
70 % 24 29 1093
50 % 24 29 1127
40 % 24 29 1159
30 % 52 71 389

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures