Sequence Similarity Clusters for the Entities in PDB 3EDQ

Entity #1 | Chains: A,C
Caspase-3 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 37 965
95 % 8 40 1141 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 8 40 1164
70 % 8 40 1196
50 % 8 45 975
40 % 8 45 1005
30 % 8 45 1058
Entity #2 | Chains: B,D
Caspase-3 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 3241
95 % 15 58 666 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.3
PDBFlex
90 % 15 58 702
70 % 12 50 862
50 % 13 67 543
40 % 13 68 570
30 % 13 68 596
Entity #3 | Chains: E,F
AC-LDESD-CHO peptide protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures