Sequence Similarity Clusters for the Entities in PDB 3E8E

Entity #1 | Chains: A,B,E,I,L,P
cAMP-dependent protein kinase catalytic subunit alpha protein, length: 350 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 23 39 948
95 % 220 292 119 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.0
PDBFlex
90 % 221 295 123
70 % 221 295 130
50 % 221 295 157
40 % 221 295 172
30 % 222 296 176
Entity #2 | Chains: C,F,G,J,N,Q
PKI inhibitor peptide protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 137 215
95 % 100 137 279 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.8
PDBFlex
90 % 126 164 254
70 % 126 164 295
50 % 126 164 350
40 % 126 164 367
30 % 126 164 381

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures