Sequence Similarity Clusters for the Entities in PDB 3E5N

Entity #1 | Chains: A
D-alanine-D-alanine ligase A protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 20084
95 % 1 5 18369 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 5 18016
70 % 1 5 16782
50 % 1 7 6182
40 % 2 8 5221
30 % 13 48 563

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures