Sequence Similarity Clusters for the Entities in PDB 3E47

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 10
95 % 276 309 24 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 276 309 26
70 % 276 309 34
50 % 276 309 66
40 % 288 366 43
30 % 1764 2273 2
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 275 305 18
95 % 275 305 29 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 275 305 31
70 % 275 305 39
50 % 275 305 71
40 % 287 360 47
30 % 287 362 49
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 182 74
95 % 235 247 61 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 235 247 65
70 % 282 312 26
50 % 282 316 60
40 % 282 316 79
30 % 288 339 30
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 243 273 21
95 % 276 306 26 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 276 306 28
70 % 276 306 37
50 % 276 306 69
40 % 276 328 78
30 % 276 328 82
Entity #13 | Chains: 1,M
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 306 16
95 % 276 306 28 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 276 306 29
70 % 276 306 38
50 % 276 306 70
40 % 276 306 89
30 % 276 306 90
Entity #14 | Chains: 2,N
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 306 14
95 % 276 306 25 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 276 306 27
70 % 276 306 35
50 % 276 306 67
40 % 276 310 84
30 % 276 310 87
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 11
95 % 276 309 19 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 276 309 22
70 % 276 309 30
50 % 288 364 36
40 % 288 366 42
30 % 1765 2273 2
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 12
95 % 276 309 22 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 276 309 25
70 % 276 309 33
50 % 288 363 37
40 % 295 393 18
30 % 1766 2273 2
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 308 13
95 % 275 309 23 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 276 310 21
70 % 276 310 29
50 % 288 365 35
40 % 288 365 45
30 % 1767 2273 2
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 307 17
95 % 276 309 20 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 276 309 23
70 % 276 309 31
50 % 276 309 65
40 % 276 309 87
30 % 1768 2273 2
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 45 468
95 % 35 45 638 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 45 671
70 % 35 45 700
50 % 47 97 317
40 % 47 99 317
30 % 1769 2273 2
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 309 9
95 % 276 309 21 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 276 309 24
70 % 276 309 32
50 % 288 361 40
40 % 288 367 44
30 % 1770 2273 2
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 240 41
95 % 255 285 33 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 266 296 34
70 % 266 296 43
50 % 288 339 52
40 % 288 339 70
30 % 288 339 72
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 306 15
95 % 276 306 27 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 276 306 30
70 % 276 306 36
50 % 288 357 41
40 % 288 363 46
30 % 288 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5LE5 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
2 5LEY 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
3 5LF7 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
4 5LF1 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
5 5LF4 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
6 5LF6 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
7 5LF3 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
8 5LEX 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
9 5LEZ 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
10 1RYP 7 G, U 20S PROTEASOME 4932 3.4.25.1 | Details
11 5LF0 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
12 4EU2 7 G, U Proteasome component C1 UNP RESIDUES 5-248 4932 3.4.25.1 | Details
13 3GPT 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
14 3HYE 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
15 4R3O 7 G, U Proteasome subunit alpha type-3 UNP RESIDUES 2-246 9606 3.4.25.1 | Details
16 3OEU 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
17 3GPW 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
18 3MG6 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
19 4LQI 6 F, T Proteasome subunit alpha type-7 4932 3.4.25.1 | Details
20 3MG8 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
21 1G65 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
22 3TDD 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
23 3SDI 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
24 1G0U 6 F, T PROTEASOME COMPONENT C1 PART OF 20S SUBUNIT 4932 3.4.25.1 | Details
25 4HNP 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
26 4HRD 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
27 4GK7 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
28 3SDK 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
29 3MG0 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
30 4HRC 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
31 3D29 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
32 4FZC 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
33 3DY3 6 F, T Proteasome component C1 UNP residues 5-248 4932 3.4.25.1 | Details
34 3MG7 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
35 2GPL 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
36 3OKJ 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
37 4V7O 7 AL, AX, BG, BU Proteasome component C1 4932 3.4.25.1 | Details
38 4FZG 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
39 3OEV 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
40 3DY4 6 F, T Proteasome component C1 UNP residues 5-248 4932 3.4.25.1 | Details
41 4R67 7 G, U, i, w Proteasome subunit alpha type-3 UNP RESIDUES 2-246 9606 3.4.25.1 | Details
42 2FAK 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
43 2F16 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
44 3GPJ 6 F, T Proteasome component C1 sequence database residues 5-248 4932 3.4.25.1 | Details
45 3SHJ 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
46 3MG4 6 F, T Proteasome component C1 4932 3.4.25.1 | Details
47 3E47 6 F, T Proteasome component C1 UNP residues 5-248 4932 3.4.25.1 | Details
48 3UNB 6 F, T, h, v Proteasome subunit alpha type-3 10090 3.4.25.1 | Details
49 6E5B 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
50 1IRU 7 G, U 20S proteasome 9913
51 3UNF 6 F, T Proteasome subunit alpha type-3 10090 3.4.25.1 | Details
52 3UNE 6 F, T, h, v Proteasome subunit alpha type-3 10090 3.4.25.1 | Details
53 3UNH 6 F, T Proteasome subunit alpha type-3 10090 3.4.25.1 | Details
54 1JD2 6 1, F PROTEASOME COMPONENT C1 part of 20S subunit 4932 3.4.25.1 | Details
55 5DSV 1 A, B, C, D, E, F, G, H, I, J, K, L, M, N Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
56 6RGQ 7 G, U Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
57 6REY 7 G, U Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
58 6R70 7 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
59 6MSB 26 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
60 6MSD 26 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
61 6MSE 27 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
62 6MSG 27 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
63 6MSH 26 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
64 6MSJ 26 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
65 6MSK 26 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
66 6EF0 7 G Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
67 6EF1 7 G Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
68 6EF2 7 G Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
69 6FVT 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
70 6FVU 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
71 6FVV 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
72 6FVW 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
73 6FVX 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
74 6FVY 7 G, g Probable proteasome subunit alpha type-7 4932 3.4.25.1 | Details
75 6EPC 7 G Proteasome subunit alpha type-3 10116 3.4.25.1 | Details
76 6EPD 7 G Proteasome subunit alpha type-3 10116 3.4.25.1 | Details
77 6EPE 7 G Proteasome subunit alpha type-3 10116 3.4.25.1 | Details
78 6EPF 7 G Proteasome subunit alpha type-3 10116 3.4.25.1 | Details
79 6AVO 7 J, Q Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
80 5VFP 7 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
81 5VFQ 7 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
82 5VFR 18 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
83 5VFS 7 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
84 5VFT 24 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
85 5VFU 24 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
86 5VFO 7 M, m Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
87 5M32 6 F, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
88 5T0G 7 M Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
89 5T0H 13 M Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
90 5T0I 13 M Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
91 5T0J 8 M Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
92 5T0C 25 AM, BM Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
93 5LN3 15 G Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
94 5GJQ 21 X, n Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
95 5GJR 25 X, n Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
96 5L4G 7 G, T Proteasome subunit alpha type-3 9606 3.4.25.1 | Details
97 5A0Q 7 G, U PROTEASOME SUBUNIT ALPHA TYPE-3 9606 3.4.25.1 | Details